IL_8UU9_046
3D structure
- PDB id
- 8UU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 8UU9|1|A|U|1256
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU9_046 not in the Motif Atlas
- Homologous match to IL_5J7L_288
- Geometric discrepancy: 0.1121
- The information below is about IL_5J7L_288
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.9
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
8UU9|1|A|C|1253
8UU9|1|A|G|1254
8UU9|1|A|G|1255
8UU9|1|A|U|1256
8UU9|1|A|G|1257
8UU9|1|A|A|1258
8UU9|1|A|A|1259
8UU9|1|A|G|1260
*
8UU9|1|A|U|1279
8UU9|1|A|G|1280
8UU9|1|A|G|1281
8UU9|1|A|A|1282
8UU9|1|A|G|1283
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain S
- Large ribosomal subunit protein bL20
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