IL_8UU9_050

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

8UU9|1|A|G|1376

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU9_050 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.1227

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8UU9|1|A|G|1363
8UU9|1|A|G|1364
8UU9|1|A|A|1365
8UU9|1|A|A|1366
8UU9|1|A|G|1367
*
8UU9|1|A|C|1375
8UU9|1|A|G|1376
8UU9|1|A|C|1377

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain U

Large ribosomal subunit protein uL22