IL_8UU9_063

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUU,AAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU9_063 not in the Motif Atlas

Geometric match to IL_6F4H_001

Geometric discrepancy: 0.1834

The information below is about IL_6F4H_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

8UU9|1|A|G|1710
8UU9|1|A|U|1711
8UU9|1|A|U|1712
*
8UU9|1|A|A|2030
8UU9|1|A|A|2031
8UU9|1|A|C|2032

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3