IL_8UU9_088

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUACAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU9_088 not in the Motif Atlas

Geometric match to IL_3U4M_002

Geometric discrepancy: 0.3677

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

8UU9|1|A|G|2143
8UU9|1|A|U|2144
8UU9|1|A|A|2145
8UU9|1|A|C|2146
8UU9|1|A|A|2147
8UU9|1|A|G|2148
8UU9|1|A|G|2149
8UU9|1|A|A|2150
8UU9|1|A|U|2151
8UU9|1|A|A|2152
8UU9|1|A|G|2153
*
8UU9|1|A|C|2211
8UU9|1|A|C|2212

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain x

Transfer RNA; tRNA