IL_8UU9_101

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8UU9|1|A|G|2609, 8UU9|1|A|A|2610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU9_101 not in the Motif Atlas

Homologous match to IL_4WF9_095

Geometric discrepancy: 0.1265

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

8UU9|1|A|C|2543
8UU9|1|A|U|2544
8UU9|1|A|C|2545
*
8UU9|1|A|G|2607
8UU9|1|A|C|2608
8UU9|1|A|G|2609
8UU9|1|A|A|2610
8UU9|1|A|G|2611

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL32

Chain D

Large ribosomal subunit protein uL3