IL_8UU9_103

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

8UU9|1|A|A|2575

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU9_103 not in the Motif Atlas

Homologous match to IL_5J7L_342

Geometric discrepancy: 0.0981

The information below is about IL_5J7L_342

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

8UU9|1|A|U|2555
8UU9|1|A|G|2556
*
8UU9|1|A|C|2573
8UU9|1|A|A|2574
8UU9|1|A|A|2575
8UU9|1|A|G|2576

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL36

Chain L

Large ribosomal subunit protein uL13