IL_8UU9_108

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAC*GGUAG

Length

10 nucleotides

Bulged bases

8UU9|1|A|U|2722, 8UU9|1|A|A|2723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU9_108 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.0922

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

8UU9|1|A|U|2720
8UU9|1|A|G|2721
8UU9|1|A|U|2722
8UU9|1|A|A|2723
8UU9|1|A|C|2724
*
8UU9|1|A|G|2751
8UU9|1|A|G|2752
8UU9|1|A|U|2753
8UU9|1|A|A|2754
8UU9|1|A|G|2755

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain P

Large ribosomal subunit protein bL17

Chain R

Large ribosomal subunit protein bL19