IL_8UU9_183
3D structure
- PDB id
- 8UU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACGGGACUAACACCGAUAUGC*GAUUU
- Length
- 26 nucleotides
- Bulged bases
- 8UU9|1|A|U|72
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UU9_183 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.2391
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
8UU9|1|A|A|56
8UU9|1|A|C|57
8UU9|1|A|G|58
8UU9|1|A|G|59
8UU9|1|A|G|60
8UU9|1|A|A|61
8UU9|1|A|C|62
8UU9|1|A|U|63
8UU9|1|A|A|64
8UU9|1|A|A|65
8UU9|1|A|C|66
8UU9|1|A|A|67
8UU9|1|A|C|68
8UU9|1|A|C|69
8UU9|1|A|G|70
8UU9|1|A|A|71
8UU9|1|A|U|72
8UU9|1|A|A|73
8UU9|1|A|U|74
8UU9|1|A|G|75
8UU9|1|A|C|76
*
8UU9|1|A|G|109
8UU9|1|A|A|110
8UU9|1|A|U|111
8UU9|1|A|U|112
8UU9|1|A|U|113
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein uL29
- Chain 6
- Large ribosomal subunit protein bL34
- Chain V
- Large ribosomal subunit protein uL23
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