IL_8UU9_186

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUUGU*AUGACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UU9_186 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3051

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8UU9|1|A|G|2130
8UU9|1|A|U|2131
8UU9|1|A|U|2132
8UU9|1|A|U|2133
8UU9|1|A|G|2134
8UU9|1|A|U|2135
*
8UU9|1|A|A|2220
8UU9|1|A|U|2221
8UU9|1|A|G|2222
8UU9|1|A|A|2223
8UU9|1|A|C|2224
8UU9|1|A|C|2225

Current chains

Chain A

23S Ribosomal RNA

Nearby chains