IL_8UVR_017

3D structure

PDB id

8UVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8UVR|1|1A|G|801, 8UVR|1|1A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UVR_017 not in the Motif Atlas

Homologous match to IL_8VTW_017

Geometric discrepancy: 0.0452

The information below is about IL_8VTW_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17470.7

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8UVR|1|1A|G|674
8UVR|1|1A|A|675
8UVR|1|1A|A|676
8UVR|1|1A|A|677
8UVR|1|1A|C|678
*
8UVR|1|1A|G|799
8UVR|1|1A|A|800
8UVR|1|1A|G|801
8UVR|1|1A|A|802
8UVR|1|1A|U|803
8UVR|1|1A|A|804
8UVR|1|1A|G|805
8UVR|1|1A|C|806

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15