IL_8UVR_178

3D structure

PDB id

8UVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUU*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UVR_178 not in the Motif Atlas

Homologous match to IL_4V9K_064

Geometric discrepancy: 0.2752

The information below is about IL_4V9K_064

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

8UVR|1|1y|C|49
8UVR|1|1y|U|50
8UVR|1|1y|U|51
*
8UVR|1|1y|G|63
8UVR|1|1y|A|64
8UVR|1|1y|G|65

Current chains

Chain 1y

A-site and E-site Deacylated tRNAphe

Nearby chains

Chain 16

50S ribosomal protein L33