IL_8UVR_258

3D structure

PDB id

8UVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UVR_258 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.3455

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

8UVR|1|2A|G|2110
8UVR|1|2A|C|2111
8UVR|1|2A|G|2112
8UVR|1|2A|U|2113
8UVR|1|2A|A|2114
8UVR|1|2A|G|2115
8UVR|1|2A|G|2116
8UVR|1|2A|A|2117
8UVR|1|2A|U|2118
8UVR|1|2A|A|2119
8UVR|1|2A|G|2120
*
8UVR|1|2A|C|2178
8UVR|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA