IL_8UVR_299

3D structure

PDB id

8UVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

8UVR|1|2a|U|244, 8UVR|1|2a|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UVR_299 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0722

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.5

Basepair signature

cWW-cSS-tSS-L-cWW-tHW-cWW

Number of instances in this motif group

7

Unit IDs

8UVR|1|2a|C|242
8UVR|1|2a|A|243
8UVR|1|2a|U|244
8UVR|1|2a|C|245
8UVR|1|2a|A|246
8UVR|1|2a|G|247
*
8UVR|1|2a|C|277
8UVR|1|2a|G|278
8UVR|1|2a|A|279
8UVR|1|2a|C|280
8UVR|1|2a|G|281
8UVR|1|2a|A|282
8UVR|1|2a|C|283
8UVR|1|2a|G|284

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2q

30S ribosomal protein S17