IL_8UVS_073

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UVS_073 not in the Motif Atlas

Homologous match to IL_8VTW_074

Geometric discrepancy: 0.0832

The information below is about IL_8VTW_074

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8UVS|1|1A|G|1856
8UVS|1|1A|G|1857
8UVS|1|1A|G|1858
8UVS|1|1A|A|1859
8UVS|1|1A|G|1860
*
8UVS|1|1A|C|1882
8UVS|1|1A|G|1883
8UVS|1|1A|A|1884
8UVS|1|1A|A|1885
8UVS|1|1A|C|1886

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1y

Transfer RNA; tRNA