IL_8UVS_249

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGAAA(5MU)UC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

8UVS|1|2A|A|1938, 8UVS|1|2A|U|1944, 8UVS|1|2A|U|1963

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UVS_249 not in the Motif Atlas

Homologous match to IL_8VTW_076

Geometric discrepancy: 0.0696

The information below is about IL_8VTW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8UVS|1|2A|C|1934
8UVS|1|2A|G|1935
8UVS|1|2A|A|1936
8UVS|1|2A|A|1937
8UVS|1|2A|A|1938
8UVS|1|2A|5MU|1939
8UVS|1|2A|U|1940
8UVS|1|2A|C|1941
8UVS|1|2A|5MC|1942
8UVS|1|2A|U|1943
8UVS|1|2A|U|1944
8UVS|1|2A|G|1945
*
8UVS|1|2A|C|1961
8UVS|1|2A|5MC|1962
8UVS|1|2A|U|1963
8UVS|1|2A|G|1964

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2w

Transfer RNA; tRNA

Chain 2x

Transfer RNA; tRNA