IL_8UVS_258

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UVS_258 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3466

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

8UVS|1|2A|G|2124
8UVS|1|2A|G|2125
8UVS|1|2A|A|2126
8UVS|1|2A|G|2127
*
8UVS|1|2A|C|2161
8UVS|1|2A|G|2162
8UVS|1|2A|C|2163
8UVS|1|2A|C|2164
8UVS|1|2A|G|2165
8UVS|1|2A|G|2166
8UVS|1|2A|U|2167
8UVS|1|2A|G|2168
8UVS|1|2A|A|2169
8UVS|1|2A|A|2170
8UVS|1|2A|A|2171
8UVS|1|2A|U|2172
8UVS|1|2A|A|2173
8UVS|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA