IL_8UVS_280

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGGG*CCGAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UVS_280 not in the Motif Atlas

Homologous match to IL_8VTW_108

Geometric discrepancy: 0.0529

The information below is about IL_8VTW_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49093.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8UVS|1|2A|G|2843
8UVS|1|2A|G|2844
8UVS|1|2A|G|2845
8UVS|1|2A|G|2846
*
8UVS|1|2A|C|2870
8UVS|1|2A|C|2871
8UVS|1|2A|G|2872
8UVS|1|2A|A|2873
8UVS|1|2A|C|2874

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2R

50S ribosomal protein L17

Chain 2T

50S ribosomal protein L19