IL_8UVS_309

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UVS_309 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.0857

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

8UVS|1|2a|G|450
8UVS|1|2a|A|451
8UVS|1|2a|A|452
8UVS|1|2a|A|453
8UVS|1|2a|C|454
8UVS|1|2a|C|455
*
8UVS|1|2a|G|476
8UVS|1|2a|A|477
8UVS|1|2a|C|479
8UVS|1|2a|U|480
8UVS|1|2a|G|481
8UVS|1|2a|A|482
8UVS|1|2a|C|483

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16