IL_8UX8_039

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

8UX8|1|1|U|1061

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UX8_039 not in the Motif Atlas

Geometric match to IL_5D8H_002

Geometric discrepancy: 0.135

The information below is about IL_5D8H_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

8UX8|1|1|G|1059
8UX8|1|1|U|1060
8UX8|1|1|U|1061
8UX8|1|1|G|1062
*
8UX8|1|1|C|1076
8UX8|1|1|A|1077
8UX8|1|1|U|1078
8UX8|1|1|C|1079

Current chains

Chain 1

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16