IL_8UX8_046

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

8UX8|1|1|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UX8_046 not in the Motif Atlas

Geometric match to IL_4MGN_001

Geometric discrepancy: 0.2121

The information below is about IL_4MGN_001

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

8UX8|1|1|C|1319
8UX8|1|1|C|1320
8UX8|1|1|A|1321
8UX8|1|1|A|1322
8UX8|1|1|C|1323
*
8UX8|1|1|G|1331
8UX8|1|1|G|1332
8UX8|1|1|G|1333

Current chains

Chain 1

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain T

50S ribosomal protein L23