IL_8UX8_121

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8UX8|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UX8_121 not in the Motif Atlas

Geometric match to IL_5J7L_012

Geometric discrepancy: 0.1157

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8UX8|1|2|G|147
8UX8|1|2|G|148
8UX8|1|2|A|149
8UX8|1|2|U|150
8UX8|1|2|A|151
8UX8|1|2|A|152
8UX8|1|2|C|153
*
8UX8|1|2|G|168
8UX8|1|2|C|169
8UX8|1|2|U|170
8UX8|1|2|A|171
8UX8|1|2|A|172
8UX8|1|2|U|173
8UX8|1|2|A|174
8UX8|1|2|C|175

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20