IL_8UX8_162

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

8UX8|1|2|U|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UX8_162 not in the Motif Atlas

Geometric match to IL_4LFB_050

Geometric discrepancy: 0.2415

The information below is about IL_4LFB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8UX8|1|2|C|1158
8UX8|1|2|U|1159
8UX8|1|2|G|1160
8UX8|1|2|C|1161
*
8UX8|1|2|G|1175
8UX8|1|2|A|1176
8UX8|1|2|G|1177
8UX8|1|2|G|1178
8UX8|1|2|A|1179
8UX8|1|2|A|1180
8UX8|1|2|G|1181

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain n

Small ribosomal subunit protein uS9