IL_8UX8_178
3D structure
- PDB id
- 8UX8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCU*AGAAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UX8_178 not in the Motif Atlas
- Geometric match to IL_5T83_002
- Geometric discrepancy: 0.3748
- The information below is about IL_5T83_002
- Detailed Annotation
- 8-nt loop receptor
- Broad Annotation
- Loop-receptor motif
- Motif group
- IL_83497.1
- Basepair signature
- cWW-L-R-cSH-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
8UX8|1|3|C|30
8UX8|1|3|C|31
8UX8|1|3|U|32
*
8UX8|1|3|A|50
8UX8|1|3|G|51
8UX8|1|3|A|52
8UX8|1|3|A|53
8UX8|1|3|G|54
Current chains
- Chain 3
- 5S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L5
- Chain O
- Large ribosomal subunit protein uL18
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