IL_8UXA_024

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_024 not in the Motif Atlas

Geometric match to IL_7TZS_003

Geometric discrepancy: 0.2574

The information below is about IL_7TZS_003

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8UXA|1|A|C|785
8UXA|1|A|A|786
*
8UXA|1|A|U|839
8UXA|1|A|C|840
8UXA|1|A|G|841

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL5m

Chain K

Large ribosomal subunit protein uL16m

Chain R

Large ribosomal subunit protein bL27m

Chain c

Large ribosomal subunit protein mL60