IL_8UXA_025

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAU*AAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_025 not in the Motif Atlas

Geometric match to IL_8B0X_092

Geometric discrepancy: 0.2967

The information below is about IL_8B0X_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16301.1

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

9

Unit IDs

8UXA|1|A|G|787
8UXA|1|A|C|788
8UXA|1|A|A|789
8UXA|1|A|A|790
8UXA|1|A|U|791
*
8UXA|1|A|A|835
8UXA|1|A|A|836
8UXA|1|A|U|837
8UXA|1|A|C|838

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL5m

Chain K

Large ribosomal subunit protein uL16m