IL_8UXA_040

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_040 not in the Motif Atlas

Geometric match to IL_8P9A_350

Geometric discrepancy: 0.1614

The information below is about IL_8P9A_350

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

8UXA|1|A|A|1372
8UXA|1|A|U|1373
8UXA|1|A|U|1374
*
8UXA|1|A|A|1392
8UXA|1|A|U|1393
8UXA|1|A|U|1394

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain B

Large ribosomal subunit protein uL2m

Chain S

Large ribosomal subunit protein bL28m

Chain Y

Large ribosomal subunit protein bL34m