IL_8UXA_048

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

8UXA|1|A|G|1892

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_048 not in the Motif Atlas

Geometric match to IL_8B0X_126

Geometric discrepancy: 0.1138

The information below is about IL_8B0X_126

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8UXA|1|A|A|1621
8UXA|1|A|C|1622
8UXA|1|A|U|1623
8UXA|1|A|C|1624
8UXA|1|A|G|1625
8UXA|1|A|G|1626
*
8UXA|1|A|C|1890
8UXA|1|A|U|1891
8UXA|1|A|G|1892
8UXA|1|A|U|1893

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL3m

Chain I

Large ribosomal subunit protein uL14m