IL_8UXA_052

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCAGAA*UUAAGUAUA

Length

16 nucleotides

Bulged bases

8UXA|1|A|A|1708, 8UXA|1|A|A|1724, 8UXA|1|A|U|1728

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_052 not in the Motif Atlas

Geometric match to IL_4V9F_065

Geometric discrepancy: 0.1769

The information below is about IL_4V9F_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8UXA|1|A|U|1705
8UXA|1|A|G|1706
8UXA|1|A|C|1707
8UXA|1|A|A|1708
8UXA|1|A|G|1709
8UXA|1|A|A|1710
8UXA|1|A|A|1711
*
8UXA|1|A|U|1721
8UXA|1|A|U|1722
8UXA|1|A|A|1723
8UXA|1|A|A|1724
8UXA|1|A|G|1725
8UXA|1|A|U|1726
8UXA|1|A|A|1727
8UXA|1|A|U|1728
8UXA|1|A|A|1729

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain AL

Small subunit ribosomal RNA; SSU rRNA

Chain B

Large ribosomal subunit protein uL2m