IL_8UXA_057

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_057 not in the Motif Atlas

Geometric match to IL_4V9F_070

Geometric discrepancy: 0.1203

The information below is about IL_4V9F_070

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_24886.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

12

Unit IDs

8UXA|1|A|G|1833
8UXA|1|A|C|1834
*
8UXA|1|A|G|1864
8UXA|1|A|C|1865
8UXA|1|A|A|1866
8UXA|1|A|U|1867

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain AA

Small ribosomal subunit protein mS38

Chain AM

Transfer RNA; tRNA