IL_8UXA_062

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

8UXA|1|A|A|2705

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_062 not in the Motif Atlas

Geometric match to IL_9DFE_081

Geometric discrepancy: 0.0817

The information below is about IL_9DFE_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8UXA|1|A|C|1970
8UXA|1|A|A|1971
*
8UXA|1|A|U|2704
8UXA|1|A|A|2705
8UXA|1|A|C|2706
8UXA|1|A|G|2707

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain AM

Transfer RNA; tRNA

Chain B

Large ribosomal subunit protein uL2m