IL_8UXA_082

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAGUAC*GGACCA

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_082 not in the Motif Atlas

Geometric match to IL_8B0X_161

Geometric discrepancy: 0.1326

The information below is about IL_8B0X_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8UXA|1|A|U|2919
8UXA|1|A|U|2920
8UXA|1|A|A|2921
8UXA|1|A|G|2922
8UXA|1|A|U|2923
8UXA|1|A|A|2924
8UXA|1|A|C|2925
*
8UXA|1|A|G|2930
8UXA|1|A|G|2931
8UXA|1|A|A|2932
8UXA|1|A|C|2933
8UXA|1|A|C|2934
8UXA|1|A|A|2935

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL6m