IL_8UXA_087

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAUC*GU

Length

6 nucleotides

Bulged bases

8UXA|1|A|A|3124, 8UXA|1|A|U|3125

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_087 not in the Motif Atlas

Geometric match to IL_8P9A_363

Geometric discrepancy: 0.267

The information below is about IL_8P9A_363

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

8UXA|1|A|A|3123
8UXA|1|A|A|3124
8UXA|1|A|U|3125
8UXA|1|A|C|3126
*
8UXA|1|A|G|3259
8UXA|1|A|U|3260

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL3m

Chain L

Large ribosomal subunit protein bL17m

Chain M

Large ribosomal subunit protein bL19m

Chain a

Large ribosomal subunit protein mL58