IL_8UXA_094

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUGAC*GAG

Length

9 nucleotides

Bulged bases

8UXA|1|AL|A|55, 8UXA|1|AL|G|57, 8UXA|1|AL|A|58

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_094 not in the Motif Atlas

Geometric match to IL_8B0X_003

Geometric discrepancy: 0.1494

The information below is about IL_8B0X_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

8UXA|1|AL|C|54
8UXA|1|AL|A|55
8UXA|1|AL|U|56
8UXA|1|AL|G|57
8UXA|1|AL|A|58
8UXA|1|AL|C|59
*
8UXA|1|AL|G|363
8UXA|1|AL|A|364
8UXA|1|AL|G|365

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain r

Small ribosomal subunit protein uS12m