IL_8UXA_104
3D structure
- PDB id
- 8UXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUUAG*CAACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 8UXA|1|AL|U|248, 8UXA|1|AL|C|285
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UXA_104 not in the Motif Atlas
- Homologous match to IL_6CZR_123
- Geometric discrepancy: 0.2608
- The information below is about IL_6CZR_123
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.2
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8UXA|1|AL|G|246
8UXA|1|AL|U|247
8UXA|1|AL|U|248
8UXA|1|AL|U|249
8UXA|1|AL|A|250
8UXA|1|AL|G|251
*
8UXA|1|AL|C|282
8UXA|1|AL|A|283
8UXA|1|AL|A|284
8UXA|1|AL|C|285
8UXA|1|AL|G|286
8UXA|1|AL|A|287
8UXA|1|AL|U|288
8UXA|1|AL|C|289
Current chains
- Chain AL
- Small ribosomal subunit rRNA
Nearby chains
- Chain r
- Small ribosomal subunit protein uS12m
- Chain u
- Small ribosomal subunit protein uS15m
- Chain w
- 37S ribosomal protein S17, mitochondrial
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