IL_8UXA_113
3D structure
- PDB id
- 8UXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGCCAG*CGGUAACAC
- Length
- 16 nucleotides
- Bulged bases
- 8UXA|1|AL|U|645, 8UXA|1|AL|A|646, 8UXA|1|AL|C|648, 8UXA|1|AL|A|649
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UXA_113 not in the Motif Atlas
- Homologous match to IL_6CZR_133
- Geometric discrepancy: 0.5274
- The information below is about IL_6CZR_133
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8UXA|1|AL|G|629
8UXA|1|AL|U|630
8UXA|1|AL|G|631
8UXA|1|AL|C|632
8UXA|1|AL|C|633
8UXA|1|AL|A|634
8UXA|1|AL|G|635
*
8UXA|1|AL|C|642
8UXA|1|AL|G|643
8UXA|1|AL|G|644
8UXA|1|AL|U|645
8UXA|1|AL|A|646
8UXA|1|AL|A|647
8UXA|1|AL|C|648
8UXA|1|AL|A|649
8UXA|1|AL|C|650
Current chains
- Chain AL
- Small ribosomal subunit rRNA
Nearby chains
- Chain AJ
- Small ribosomal subunit protein mS33
- Chain AN
- mRNA
- Chain i
- Ribosomal protein VAR1, mitochondrial
- Chain r
- Small ribosomal subunit protein uS12m
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