IL_8UXA_116

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_116 not in the Motif Atlas

Homologous match to IL_6CZR_135

Geometric discrepancy: 0.2829

The information below is about IL_6CZR_135

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8UXA|1|AL|C|689
8UXA|1|AL|G|690
8UXA|1|AL|U|691
8UXA|1|AL|A|692
8UXA|1|AL|G|693
*
8UXA|1|AL|U|822
8UXA|1|AL|G|823
8UXA|1|AL|A|824
8UXA|1|AL|G|825
8UXA|1|AL|G|826

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain r

Small ribosomal subunit protein uS12m

Chain u

Small ribosomal subunit protein uS15m

Chain w

37S ribosomal protein S17, mitochondrial