IL_8UXA_121

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGUAG*UU

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_121 not in the Motif Atlas

Homologous match to IL_6CZR_144

Geometric discrepancy: 0.1704

The information below is about IL_6CZR_144

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

8UXA|1|AL|A|839
8UXA|1|AL|G|840
8UXA|1|AL|U|841
8UXA|1|AL|A|842
8UXA|1|AL|G|843
*
8UXA|1|AL|U|869
8UXA|1|AL|U|870

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain B

Large ribosomal subunit protein uL2m

Chain q

Small ribosomal subunit protein uS11m