IL_8UXA_122

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAA*UGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_122 not in the Motif Atlas

Homologous match to IL_6CZR_145

Geometric discrepancy: 0.1886

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8UXA|1|AL|C|844
8UXA|1|AL|G|845
8UXA|1|AL|A|846
8UXA|1|AL|A|847
8UXA|1|AL|A|848
*
8UXA|1|AL|U|864
8UXA|1|AL|G|865
8UXA|1|AL|U|866
8UXA|1|AL|A|867
8UXA|1|AL|G|868

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain q

Small ribosomal subunit protein uS11m

Chain z

Small ribosomal subunit protein bS21m