IL_8UXA_125

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUUA*UUUC

Length

9 nucleotides

Bulged bases

8UXA|1|AL|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_125 not in the Motif Atlas

Geometric match to IL_8P9A_462

Geometric discrepancy: 0.2354

The information below is about IL_8P9A_462

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8UXA|1|AL|G|990
8UXA|1|AL|G|991
8UXA|1|AL|U|992
8UXA|1|AL|U|993
8UXA|1|AL|A|994
*
8UXA|1|AL|U|1456
8UXA|1|AL|U|1457
8UXA|1|AL|U|1458
8UXA|1|AL|C|1459

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain AN

mRNA

Chain Z

Small ribosomal subunit protein mS37