IL_8UXA_130

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UACA*UG

Length

6 nucleotides

Bulged bases

8UXA|1|AL|A|1100, 8UXA|1|AL|C|1101

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_130 not in the Motif Atlas

Geometric match to IL_9DID_004

Geometric discrepancy: 0.2715

The information below is about IL_9DID_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8UXA|1|AL|U|1099
8UXA|1|AL|A|1100
8UXA|1|AL|C|1101
8UXA|1|AL|A|1102
*
8UXA|1|AL|U|1237
8UXA|1|AL|G|1238

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain AJ

Small ribosomal subunit protein mS33

Chain AN

mRNA

Chain i

Ribosomal protein VAR1, mitochondrial

Chain p

Small ribosomal subunit protein uS10m