IL_8UXA_131

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*UCAUA

Length

7 nucleotides

Bulged bases

8UXA|1|AL|C|1232, 8UXA|1|AL|A|1233

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_131 not in the Motif Atlas

Homologous match to IL_6CZR_155

Geometric discrepancy: 0.2508

The information below is about IL_6CZR_155

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8UXA|1|AL|U|1104
8UXA|1|AL|G|1105
*
8UXA|1|AL|U|1231
8UXA|1|AL|C|1232
8UXA|1|AL|A|1233
8UXA|1|AL|U|1234
8UXA|1|AL|A|1235

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain i

Ribosomal protein VAR1, mitochondrial

Chain p

Small ribosomal subunit protein uS10m

Chain t

37S ribosomal protein MRP2, mitochondrial