IL_8UXA_140

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACUC*GAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_140 not in the Motif Atlas

Homologous match to IL_6CZR_368

Geometric discrepancy: 0.2019

The information below is about IL_6CZR_368

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.3

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8UXA|1|AL|A|1469
8UXA|1|AL|C|1470
8UXA|1|AL|U|1471
8UXA|1|AL|C|1472
*
8UXA|1|AL|G|1589
8UXA|1|AL|A|1590
8UXA|1|AL|A|1591
8UXA|1|AL|A|1592
8UXA|1|AL|U|1593

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain AA

Small ribosomal subunit protein mS38

Chain AM

Transfer RNA; tRNA

Chain AN

mRNA