IL_8UXA_143

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAAC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_143 not in the Motif Atlas

Homologous match to IL_6CZR_169

Geometric discrepancy: 0.1968

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

8UXA|1|AL|A|1484
8UXA|1|AL|A|1485
8UXA|1|AL|A|1486
8UXA|1|AL|C|1487
*
8UXA|1|AL|G|1573
8UXA|1|AL|A|1574
8UXA|1|AL|A|1575
8UXA|1|AL|U|1576

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain AA

Small ribosomal subunit protein mS38