IL_8UXA_148

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUUU*AUUUA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UXA_148 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.2698

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

8UXA|1|AL|U|1516
8UXA|1|AL|U|1517
8UXA|1|AL|U|1518
8UXA|1|AL|U|1519
8UXA|1|AL|U|1520
*
8UXA|1|AL|A|1543
8UXA|1|AL|U|1544
8UXA|1|AL|U|1545
8UXA|1|AL|U|1546
8UXA|1|AL|A|1547

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain AE

37S ribosomal protein MRP13, mitochondrial