IL_8UXB_039
3D structure
- PDB id
- 8UXB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAG*CGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8UXB_039 not in the Motif Atlas
- Geometric match to IL_7R9G_002
- Geometric discrepancy: 0.1738
- The information below is about IL_7R9G_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8UXB|1|1|G|1038
8UXB|1|1|A|1039
8UXB|1|1|A|1040
8UXB|1|1|G|1041
*
8UXB|1|1|C|1114
8UXB|1|1|G|1115
8UXB|1|1|G|1116
8UXB|1|1|C|1117
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L6
- Chain M
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L25
- Chain f
- 50S ribosomal protein L36
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