IL_8UYP_040

3D structure

PDB id

8UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-1 5' proximal stem-loop 5

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

CUUA*UGUUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UYP_040 not in the Motif Atlas

Geometric match to IL_4DB2_001

Geometric discrepancy: 0.3985

The information below is about IL_4DB2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68909.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8UYP|13|A|C|192
8UYP|13|A|U|193
8UYP|13|A|U|194
8UYP|13|A|A|195
*
8UYP|13|A|U|208
8UYP|13|A|G|209
8UYP|13|A|U|210
8UYP|13|A|U|211
8UYP|13|A|G|212

Current chains

Chain A

SARS-CoV-1 5' proximal stem-loop 5

Nearby chains