IL_8UYP_081

3D structure

PDB id

8UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-1 5' proximal stem-loop 5

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

AG*CGAUCAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UYP_081 not in the Motif Atlas

Geometric match to IL_6CZR_117

Geometric discrepancy: 0.1535

The information below is about IL_6CZR_117

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.3

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

8UYP|18|A|A|186
8UYP|18|A|G|187
*
8UYP|18|A|C|217
8UYP|18|A|G|218
8UYP|18|A|A|219
8UYP|18|A|U|220
8UYP|18|A|C|221
8UYP|18|A|A|222
8UYP|18|A|U|223

Current chains

Chain A

SARS-CoV-1 5' proximal stem-loop 5

Nearby chains