IL_8UYP_112

3D structure

PDB id

8UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-1 5' proximal stem-loop 5

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GUAAC*GCC

Length

8 nucleotides

Bulged bases

8UYP|3|A|A|168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UYP_112 not in the Motif Atlas

Geometric match to IL_3PDR_004

Geometric discrepancy: 0.3464

The information below is about IL_3PDR_004

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

8UYP|3|A|G|166
8UYP|3|A|U|167
8UYP|3|A|A|168
8UYP|3|A|A|169
8UYP|3|A|C|170
*
8UYP|3|A|G|272
8UYP|3|A|C|273
8UYP|3|A|C|274

Current chains

Chain A

SARS-CoV-1 5' proximal stem-loop 5

Nearby chains