IL_8UYP_127

3D structure

PDB id

8UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-1 5' proximal stem-loop 5

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

AAA*UU

Length

5 nucleotides

Bulged bases

8UYP|5|A|A|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UYP_127 not in the Motif Atlas

Geometric match to IL_2QUX_002

Geometric discrepancy: 0.2264

The information below is about IL_2QUX_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8UYP|5|A|A|160
8UYP|5|A|A|161
8UYP|5|A|A|162
*
8UYP|5|A|U|278
8UYP|5|A|U|279

Current chains

Chain A

SARS-CoV-1 5' proximal stem-loop 5

Nearby chains