IL_8UYP_158

3D structure

PDB id

8UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-1 5' proximal stem-loop 5

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

AC*GGUGU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UYP_158 not in the Motif Atlas

Geometric match to IL_4WF9_091

Geometric discrepancy: 0.3732

The information below is about IL_4WF9_091

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

8UYP|9|A|A|155
8UYP|9|A|C|156
*
8UYP|9|A|G|283
8UYP|9|A|G|284
8UYP|9|A|U|285
8UYP|9|A|G|286
8UYP|9|A|U|287

Current chains

Chain A

SARS-CoV-1 5' proximal stem-loop 5

Nearby chains